CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.144 rna-evm.model.Chr16.144 Chr16 4719775 4762530 PREDICTED: 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 4 GO:0003854;GO:0006694;GO:0016616;GO:0055114 K00070
gene-evm.TU.Chr16.1440 rna-evm.model.Chr16.1440 Chr16 44835718 44845298 PREDICTED: microtubule-associated protein futsch nan K13582
gene-evm.TU.Chr16.1441 rna-evm.model.Chr16.1441 Chr16 44876867 44945962 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr16.1442 rna-evm.model.Chr16.1442 Chr16 45001885 45035586 PREDICTED: collagen, type V/XI/XXIV/XXVII, alpha nan K23612
gene-evm.TU.Chr16.1443 rna-evm.model.Chr16.1443 Chr16 45038538 45044477 PREDICTED: GPI mannosyltransferase 3 GO:0000030;GO:0006506;GO:0016757 K05286
gene-evm.TU.Chr16.1444 rna-evm.model.Chr16.1444 Chr16 45051333 45108258 PREDICTED: Protein HIRA GO:0005515;GO:0005634;GO:0006325;GO:0006351;GO:0006355 K11293
gene-evm.TU.Chr16.1445 rna-evm.model.Chr16.1445 Chr16 45114755 45152512 PREDICTED: N-alpha-acetyltransferase 25, NatB auxiliary subunit nan K17973
gene-evm.TU.Chr16.1447 rna-evm.model.Chr16.1447 Chr16 45181136 45197866 PREDICTED: Beta-1,3-glucosyltransferase GO:0016020;GO:0016757 K13675
gene-evm.TU.Chr16.1448 rna-evm.model.Chr16.1448 Chr16 45204088 45208744 PREDICTED: Transmembrane protein 199 GO:0070072 K23542
gene-evm.TU.Chr16.1449 rna-evm.model.Chr16.1449 Chr16 45207951 45243929 PREDICTED: Transport and Golgi organization protein 2 homolog nan K01459

For more detailed data, you can explore the Download section to access the full dataset.