CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1421 rna-evm.model.Chr16.1421 Chr16 44031260 44037357 PREDICTED: Zinc finger protein 346 GO:0003676;GO:0008270;GO:0042981 K26542
gene-evm.TU.Chr16.1422 rna-evm.model.Chr16.1422 Chr16 44071882 44081054 PREDICTED: Protein MTO1 homolog, mitochondrial GO:0002098;GO:0008033;GO:0050660 K03495
gene-evm.TU.Chr16.1425 rna-evm.model.Chr16.1425 Chr16 44105451 44158072 PREDICTED: Beta-1 adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04160
gene-evm.TU.Chr16.1426 rna-evm.model.Chr16.1426 Chr16 44185862 44206297 PREDICTED: Protein MTO1 homolog, mitochondrial GO:0002098;GO:0008033;GO:0050660 K03495
gene-evm.TU.Chr16.1428_evm.TU.Chr16.1430 rna-evm.model.Chr16.1428_evm.model.Chr16.1430 Chr16 44210084 44273622 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 32 GO:0004843;GO:0005509;GO:0016579;GO:0004843 K11837
gene-evm.TU.Chr16.1429 rna-evm.model.Chr16.1429 Chr16 44255641 44257107 PREDICTED: Octopamine receptor GO:0004930;GO:0007186;GO:0016020 K04138
gene-evm.TU.Chr16.143 rna-evm.model.Chr16.143 Chr16 4691989 4697720 PREDICTED: C-factor nan K00059
gene-evm.TU.Chr16.1433_evm.TU.Chr16.1434 rna-evm.model.Chr16.1433_evm.model.Chr16.1434 Chr16 44406277 44558386 PREDICTED: Autism susceptibility gene 2 protein nan K23214
gene-evm.TU.Chr16.1436 rna-evm.model.Chr16.1436 Chr16 44612502 44613962 PREDICTED: liver stage antigen 3 nan K13254
gene-evm.TU.Chr16.1437 rna-evm.model.Chr16.1437 Chr16 44653457 44769183 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912

For more detailed data, you can explore the Download section to access the full dataset.