CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1409 rna-evm.model.Chr16.1409 Chr16 43831791 43841646 PREDICTED: Developmentally-regulated GTP-binding protein 1 GO:0005525 K06944
gene-evm.TU.Chr16.141 rna-evm.model.Chr16.141 Chr16 4682971 4688244 PREDICTED: 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1 GO:0003854;GO:0006694;GO:0016616;GO:0055114 K00070
gene-evm.TU.Chr16.1410 rna-evm.model.Chr16.1410 Chr16 43842525 43845037 uncharacterized protein nan K10635
gene-evm.TU.Chr16.1413 rna-evm.model.Chr16.1413 Chr16 43858330 43859858 PREDICTED: collagen, type I, alpha nan K20701
gene-evm.TU.Chr16.1414 rna-evm.model.Chr16.1414 Chr16 43865151 43869646 PREDICTED: Sushi, nidogen and EGF-like domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr16.1415 rna-evm.model.Chr16.1415 Chr16 43873296 43878401 PREDICTED: Toll-like receptor 1 GO:0005515;GO:0007165 K10169
gene-evm.TU.Chr16.1416 rna-evm.model.Chr16.1416 Chr16 43878696 43881316 PREDICTED: proprotein convertase subtilisin/kexin type 5 [EC:3.4.21.-] nan K08654
gene-evm.TU.Chr16.1417 rna-evm.model.Chr16.1417 Chr16 43886026 43892440 uncharacterized protein nan K23819
gene-evm.TU.Chr16.1418 rna-evm.model.Chr16.1418 Chr16 43900533 43902397 PREDICTED: Probable G-protein coupled receptor B0563.6 GO:0004930;GO:0007186;GO:0016020 K26201
gene-evm.TU.Chr16.142 rna-evm.model.Chr16.142 Chr16 4689340 4690820 PREDICTED: 3beta-hydroxy-Delta5-steroid dehydrogenase / steroid Delta-isomerase [EC:1.1.1.145 5.3.3.1] GO:0003854;GO:0006694;GO:0016616;GO:0055114 K00070

For more detailed data, you can explore the Download section to access the full dataset.