CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1397 rna-evm.model.Chr16.1397 Chr16 43331474 43354216 PREDICTED: Mitochondrial sodium/calcium exchanger protein GO:0016020;GO:0055085 K13754
gene-evm.TU.Chr16.1398 rna-evm.model.Chr16.1398 Chr16 43360871 43378690 PREDICTED: MAR-binding filament-like protein 1 nan K03529
gene-evm.TU.Chr16.1399 rna-evm.model.Chr16.1399 Chr16 43395499 43433799 PREDICTED: Kinesin-like protein KIF12 GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10399
gene-evm.TU.Chr16.14 rna-evm.model.Chr16.14 Chr16 522832 528753 PREDICTED: Amine sulfotransferase GO:0008146 K01025
gene-evm.TU.Chr16.1400 rna-evm.model.Chr16.1400 Chr16 43438614 43507912 PREDICTED: Kinesin-like protein KIF12 GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10399
gene-evm.TU.Chr16.1402 rna-evm.model.Chr16.1402 Chr16 43548759 43551343 PREDICTED: Proprotein convertase subtilisin/kexin type 5 nan K08654
gene-evm.TU.Chr16.1403 rna-evm.model.Chr16.1403 Chr16 43566003 43703663 PREDICTED: Protein RFT1 homolog GO:0005319;GO:0006869;GO:0016020 K06316
gene-evm.TU.Chr16.1404 rna-evm.model.Chr16.1404 Chr16 43724103 43735496 PREDICTED: Beta-glucuronidase GO:0004553;GO:0005975 K01195
gene-evm.TU.Chr16.1406 rna-evm.model.Chr16.1406 Chr16 43782511 43788291 PREDICTED: solute carrier family 15, member 5 nan K07395
gene-evm.TU.Chr16.1408 rna-evm.model.Chr16.1408 Chr16 43824783 43828043 PREDICTED: C-factor nan K17644

For more detailed data, you can explore the Download section to access the full dataset.