CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1388 rna-evm.model.Chr16.1388 Chr16 42977196 42994239 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 nan K11714
gene-evm.TU.Chr16.1389 rna-evm.model.Chr16.1389.1 Chr16 43005010 43062305 PREDICTED: Serine/threonine-protein kinase 36 GO:0004672;GO:0005524;GO:0006468 K06228
gene-evm.TU.Chr16.139 rna-evm.model.Chr16.139 Chr16 4659356 4671679 PREDICTED: C-factor nan K17644
gene-evm.TU.Chr16.1390 rna-evm.model.Chr16.1390 Chr16 43079145 43081256 PREDICTED: Serine protease inhibitor Kazal-type 1 GO:0005515 K23417
gene-evm.TU.Chr16.1391 rna-evm.model.Chr16.1391 Chr16 43085646 43100865 PREDICTED: GPN-loop GTPase 1 GO:0003924 K14549
gene-evm.TU.Chr16.1392 rna-evm.model.Chr16.1392 Chr16 43172456 43176341 PREDICTED: Low-density lipoprotein receptor-related protein 4 nan K20051
gene-evm.TU.Chr16.1393 rna-evm.model.Chr16.1393 Chr16 43200080 43236664 PREDICTED: Adhesion G protein-coupled receptor L2 GO:0004888;GO:0004930;GO:0005509;GO:0007156;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04598
gene-evm.TU.Chr16.1394 rna-evm.model.Chr16.1394 Chr16 43245549 43259173 PREDICTED: Replication protein A 70 kDa DNA-binding subunit GO:0003676;GO:0003677;GO:0005634;GO:0006260 K07466
gene-evm.TU.Chr16.1395 rna-evm.model.Chr16.1395 Chr16 43267018 43288182 PREDICTED: Phosphatidylserine decarboxylase proenzyme, mitochondrial GO:0004609;GO:0008654 K01613
gene-evm.TU.Chr16.1396 rna-evm.model.Chr16.1396 Chr16 43296120 43325746 PREDICTED: CDP-diacylglycerol--inositol 3-phosphatidyltransferase GO:0008654;GO:0016020;GO:0016780 K00999

For more detailed data, you can explore the Download section to access the full dataset.