CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1375 rna-evm.model.Chr16.1375 Chr16 42158662 42165374 uncharacterized protein nan nan
gene-evm.TU.Chr16.1377 rna-evm.model.Chr16.1377 Chr16 42295350 42302517 PREDICTED: mitogen-activated protein kinase kinase kinase 13 [EC:2.7.11.25] nan nan
gene-evm.TU.Chr16.1379 rna-evm.model.Chr16.1379 Chr16 42386078 42403296 PREDICTED: Cell adhesion molecule 3 nan K17341
gene-evm.TU.Chr16.138 rna-evm.model.Chr16.138 Chr16 4620028 4637866 PREDICTED: BRCA1-associated protein GO:0008270 K10632
gene-evm.TU.Chr16.1380 rna-evm.model.Chr16.1380 Chr16 42440665 42444136 PREDICTED: Hemicentin-1 nan K24496
gene-evm.TU.Chr16.1381 rna-evm.model.Chr16.1381 Chr16 42472048 42473530 PREDICTED: Protein ALP1-like nan K23222
gene-evm.TU.Chr16.1382 rna-evm.model.Chr16.1382 Chr16 42476284 42495040 PREDICTED: Trihelix transcription factor ASIL2 nan K01587
gene-evm.TU.Chr16.1383 rna-evm.model.Chr16.1383 Chr16 42713048 42714346 PREDICTED: Tyramine receptor 1 GO:0004930;GO:0004989;GO:0007186;GO:0016020 K22815
gene-evm.TU.Chr16.1385 rna-evm.model.Chr16.1385 Chr16 42817601 42860618 PREDICTED: Protein draper nan K17253
gene-evm.TU.Chr16.1387 rna-evm.model.Chr16.1387 Chr16 42955165 42956189 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.