CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2427 rna-evm.model.Chr1.2427 Chr1 76065105 76088548 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K04763
gene-evm.TU.Chr1.2428 rna-evm.model.Chr1.2428 Chr1 76126588 76128166 uncharacterized protein nan nan
gene-evm.TU.Chr1.2430 rna-evm.model.Chr1.2430 Chr1 76255264 76291213 PREDICTED: coiled-coil domain-containing protein 158-like nan K05636
gene-evm.TU.Chr1.2431_evm.TU.Chr1.2432 rna-evm.model.Chr1.2431_evm.model.Chr1.2432 Chr1 76307983 76363600 PREDICTED: Coiled-coil domain-containing protein 158 nan K21954
gene-evm.TU.Chr1.2433 rna-evm.model.Chr1.2433 Chr1 76367661 76394450 PREDICTED: CD109 antigen GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr1.2434 rna-evm.model.Chr1.2434 Chr1 76411910 76425853 PREDICTED: Gamma-aminobutyric acid receptor subunit alpha-6 GO:0004888;GO:0004890;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0016020;GO:0034220 K05175
gene-evm.TU.Chr1.2435 rna-evm.model.Chr1.2435 Chr1 76501886 76502963 uncharacterized protein nan nan
gene-evm.TU.Chr1.2436 rna-evm.model.Chr1.2436 Chr1 76502997 76503371 uncharacterized protein nan nan
gene-evm.TU.Chr1.2437 rna-evm.model.Chr1.2437 Chr1 76539648 76561032 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K19477
gene-evm.TU.Chr1.2438 rna-evm.model.Chr1.2438 Chr1 76585275 76593211 PREDICTED: 60S ribosomal protein L31 GO:0003735;GO:0005840;GO:0006412 K02910

For more detailed data, you can explore the Download section to access the full dataset.