CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1363 rna-evm.model.Chr16.1363 Chr16 41862781 41888176 PREDICTED: All-trans-retinol 13,14-reductase nan K09516
gene-evm.TU.Chr16.1365 rna-evm.model.Chr16.1365 Chr16 41896941 41900589 PREDICTED: Adhesion G protein-coupled receptor E1 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04599
gene-evm.TU.Chr16.1366 rna-evm.model.Chr16.1366 Chr16 41908894 41916897 PREDICTED: Macrophage migration inhibitory factor nan K07253
gene-evm.TU.Chr16.1367 rna-evm.model.Chr16.1367 Chr16 41916684 41923064 PREDICTED: Transmembrane protein 134 nan K26497
gene-evm.TU.Chr16.1368 rna-evm.model.Chr16.1368 Chr16 41940289 41946429 PREDICTED: CDP-diacylglycerol--inositol 3-phosphatidyltransferase GO:0008654;GO:0016020;GO:0016780 K00999
gene-evm.TU.Chr16.1369 rna-evm.model.Chr16.1369 Chr16 41952522 42000585 PREDICTED: dentin sialophosphoprotein nan K23644
gene-evm.TU.Chr16.137 rna-evm.model.Chr16.137 Chr16 4591904 4615218 PREDICTED: Major vault protein nan K17266
gene-evm.TU.Chr16.1370 rna-evm.model.Chr16.1370 Chr16 42038190 42051607 PREDICTED: Meiotic nuclear division protein 1 homolog nan K06400
gene-evm.TU.Chr16.1371_evm.TU.Chr16.1373 rna-evm.model.Chr16.1371_evm.model.Chr16.1373 Chr16 42056947 42118777 uncharacterized protein nan nan
gene-evm.TU.Chr16.1372 rna-evm.model.Chr16.1372 Chr16 42065702 42113092 PREDICTED: NACHT domain- and WD repeat-containing protein 1 GO:0005515 K24734

For more detailed data, you can explore the Download section to access the full dataset.