CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1353 rna-evm.model.Chr16.1353 Chr16 41623362 41627565 PREDICTED: F-box only protein 39 GO:0005515 K10314
gene-evm.TU.Chr16.1354 rna-evm.model.Chr16.1354 Chr16 41631374 41647128 PREDICTED: Spindle and kinetochore-associated protein 2 GO:0000940;GO:0005876;GO:0007059;GO:0008017;GO:0051301 K26095
gene-evm.TU.Chr16.1355 rna-evm.model.Chr16.1355 Chr16 41652541 41679350 PREDICTED: Rab GTPase-binding effector protein 1 GO:0005096;GO:0006897;GO:0008083;GO:0046872 K12480
gene-evm.TU.Chr16.1356 rna-evm.model.Chr16.1356 Chr16 41709344 41719219 uncharacterized protein nan K15554
gene-evm.TU.Chr16.1357 rna-evm.model.Chr16.1357 Chr16 41722178 41806031 PREDICTED: Syntaxin GO:0000149;GO:0016020;GO:0016020;GO:0016192;GO:0017157 K04560
gene-evm.TU.Chr16.1358 rna-evm.model.Chr16.1358 Chr16 41806110 41815547 PREDICTED: GTP-binding nuclear protein Ran GO:0003924;GO:0005525;GO:0006913 K07936
gene-evm.TU.Chr16.1359 rna-evm.model.Chr16.1359 Chr16 41826028 41838220 PREDICTED: Probable 18S rRNA (guanine-N(7))-methyltransferase GO:0008168;GO:0016435;GO:0070476 K19306
gene-evm.TU.Chr16.136 rna-evm.model.Chr16.136 Chr16 4576481 4586825 PREDICTED: Beta-1,3-glucan-binding protein GO:0004553;GO:0005975;GO:0030246 K20697
gene-evm.TU.Chr16.1360 rna-evm.model.Chr16.1360 Chr16 41838438 41840181 PREDICTED: Chaperone protein DnaJ nan K19374
gene-evm.TU.Chr16.1362 rna-evm.model.Chr16.1362 Chr16 41845700 41854103 PREDICTED: ESCRT-I complex subunit VPS37 GO:0000813;GO:0032509 K12185

For more detailed data, you can explore the Download section to access the full dataset.