CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.134 rna-evm.model.Chr16.134 Chr16 4534578 4551685 PREDICTED: claudin GO:0016020 K19289
gene-evm.TU.Chr16.1340 rna-evm.model.Chr16.1340 Chr16 41262042 41270022 PREDICTED: TWiK family of potassium channels protein 18 GO:0005267;GO:0016020;GO:0071805 K05323
gene-evm.TU.Chr16.1342 rna-evm.model.Chr16.1342 Chr16 41368673 41370205 PREDICTED: Transmembrane protein C17orf113 nan K24642
gene-evm.TU.Chr16.1343 rna-evm.model.Chr16.1343 Chr16 41370261 41370569 PREDICTED: Zinc finger protein 862 GO:0046983 K24644
gene-evm.TU.Chr16.1344 rna-evm.model.Chr16.1344 Chr16 41383445 41386616 uncharacterized protein nan K11923
gene-evm.TU.Chr16.1346 rna-evm.model.Chr16.1346 Chr16 41428472 41447307 PREDICTED: kinesin light chain nan K10642
gene-evm.TU.Chr16.135 rna-evm.model.Chr16.135 Chr16 4566703 4574035 PREDICTED: Kelch domain-containing protein 8A GO:0005515 K10463
gene-evm.TU.Chr16.1350 rna-evm.model.Chr16.1350 Chr16 41573048 41582936 PREDICTED: Usherin nan K24333
gene-evm.TU.Chr16.1351 rna-evm.model.Chr16.1351 Chr16 41589350 41590799 PREDICTED: Tyrosine-protein kinase receptor Tie-1 nan K24318
gene-evm.TU.Chr16.1352 rna-evm.model.Chr16.1352 Chr16 41610657 41621353 PREDICTED: RING finger protein 215 nan K16273

For more detailed data, you can explore the Download section to access the full dataset.