CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1327 rna-evm.model.Chr16.1327 Chr16 40963825 40969318 PREDICTED: Carbohydrate deacetylase nan K03478
gene-evm.TU.Chr16.1328 rna-evm.model.Chr16.1328 Chr16 40976404 40977320 uncharacterized protein nan K23461
gene-evm.TU.Chr16.133 rna-evm.model.Chr16.133 Chr16 4516927 4530397 PREDICTED: Microfibril-associated glycoprotein 4 nan K25409
gene-evm.TU.Chr16.1333 rna-evm.model.Chr16.1333 Chr16 41019454 41023427 PREDICTED: 39S ribosomal protein L50, mitochondrial GO:0005739 K17431
gene-evm.TU.Chr16.1334 rna-evm.model.Chr16.1334 Chr16 41023469 41028589 PREDICTED: Serine/threonine-protein phosphatase Pgam5, mitochondrial nan K15637
gene-evm.TU.Chr16.1335 rna-evm.model.Chr16.1335.1 Chr16 41032051 41047145 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 GO:0000228;GO:0006338 K11648
gene-evm.TU.Chr16.1336 rna-evm.model.Chr16.1336 Chr16 41077300 41093453 PREDICTED: LIM domain kinase 2 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K05744
gene-evm.TU.Chr16.1337 rna-evm.model.Chr16.1337 Chr16 41104817 41108367 uncharacterized protein nan K04949
gene-evm.TU.Chr16.1338 rna-evm.model.Chr16.1338 Chr16 41110214 41118818 PREDICTED: Translation initiation factor eIF-2B subunit alpha GO:0044237 K03239
gene-evm.TU.Chr16.1339 rna-evm.model.Chr16.1339 Chr16 41119002 41135068 PREDICTED: Coiled-coil domain-containing protein 157 GO:0003676 K20282

For more detailed data, you can explore the Download section to access the full dataset.