CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1312 rna-evm.model.Chr16.1312 Chr16 40015234 40023822 PREDICTED: Protein lin-37 homolog GO:0017053 K21774
gene-evm.TU.Chr16.1314 rna-evm.model.Chr16.1314 Chr16 40041508 40044391 PREDICTED: Hemagglutinin/amebocyte aggregation factor nan K25512
gene-evm.TU.Chr16.1315 rna-evm.model.Chr16.1315 Chr16 40062278 40064852 PREDICTED: Hemagglutinin/amebocyte aggregation factor nan K25512
gene-evm.TU.Chr16.1317 rna-evm.model.Chr16.1317 Chr16 40128786 40132466 PREDICTED: prostaglandin E receptor 4 GO:0016020 K04150
gene-evm.TU.Chr16.1318 rna-evm.model.Chr16.1318 Chr16 40160363 40169233 uncharacterized protein nan K10423
gene-evm.TU.Chr16.1319 rna-evm.model.Chr16.1319 Chr16 40641889 40657177 PREDICTED: Glutamate receptor ionotropic, NMDA 2B GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05210
gene-evm.TU.Chr16.132 rna-evm.model.Chr16.132 Chr16 4501438 4509928 PREDICTED: Fibrinogen C domain-containing protein 1-B nan K10104
gene-evm.TU.Chr16.1320 rna-evm.model.Chr16.1320 Chr16 40757689 40765112 PREDICTED: Disks large 1 tumor suppressor protein GO:0005515 K12075
gene-evm.TU.Chr16.1321 rna-evm.model.Chr16.1321 Chr16 40809686 40859993 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr16.1326 rna-evm.model.Chr16.1326 Chr16 40951240 40958284 PREDICTED: Serine-enriched protein GO:0005515 K10478

For more detailed data, you can explore the Download section to access the full dataset.