CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1300 rna-evm.model.Chr16.1300 Chr16 39778288 39798490 PREDICTED: Apoptosis-inducing factor 3 GO:0016491;GO:0051537;GO:0055114 K22747
gene-evm.TU.Chr16.1301 rna-evm.model.Chr16.1301 Chr16 39802542 39805851 PREDICTED: 39S ribosomal protein L18, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02881
gene-evm.TU.Chr16.1302_evm.TU.Chr16.1303 rna-evm.model.Chr16.1302_evm.model.Chr16.1303 Chr16 39809005 39866122 PREDICTED: Notchless protein homolog 1 GO:0005515 K14855
gene-evm.TU.Chr16.1304 rna-evm.model.Chr16.1304 Chr16 39866220 39870819 PREDICTED: Protein CUSTOS GO:0016055 nan
gene-evm.TU.Chr16.1305_evm.TU.Chr16.1306 rna-evm.model.Chr16.1305_evm.model.Chr16.1306 Chr16 39871425 39913474 PREDICTED: ATPase MORC2 GO:0008270 K24135
gene-evm.TU.Chr16.1307 rna-evm.model.Chr16.1307 Chr16 39922398 39948109 PREDICTED: T-box transcription factor TBX2-B GO:0003700;GO:0005634;GO:0006355 K10177
gene-evm.TU.Chr16.1308 rna-evm.model.Chr16.1308 Chr16 39976204 39978445 PREDICTED: Ovomucoid GO:0005515 K23614
gene-evm.TU.Chr16.131 rna-evm.model.Chr16.131 Chr16 4499975 4501391 PREDICTED: Microfibril-associated glycoprotein 4 nan K25359
gene-evm.TU.Chr16.1310 rna-evm.model.Chr16.1310 Chr16 39995078 40000416 PREDICTED: agrin GO:0005515 K23615
gene-evm.TU.Chr16.1311 rna-evm.model.Chr16.1311 Chr16 40005159 40008395 PREDICTED: Serine protease inhibitor Kazal-type 6 GO:0005515 K04661

For more detailed data, you can explore the Download section to access the full dataset.