CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1291_evm.TU.Chr16.1292 rna-evm.model.Chr16.1291_evm.model.Chr16.1292 Chr16 39532592 39560261 PREDICTED: Mediator of RNA polymerase II transcription subunit 15 GO:0003712;GO:0006357;GO:0016592 K15157
gene-evm.TU.Chr16.1293 rna-evm.model.Chr16.1293 Chr16 39560356 39567145 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 30 GO:0016579;GO:0004843 K11851
gene-evm.TU.Chr16.1294 rna-evm.model.Chr16.1294 Chr16 39576496 39601287 PREDICTED: Atrial natriuretic peptide receptor 2 GO:0004672;GO:0005524;GO:0006468 K12323
gene-evm.TU.Chr16.1295 rna-evm.model.Chr16.1295 Chr16 39656937 39659466 PREDICTED: Sodium/myo-inositol cotransporter 2 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr16.1296 rna-evm.model.Chr16.1296 Chr16 39664150 39686359 PREDICTED: Sodium/glucose cotransporter 4 GO:0016020;GO:0022857;GO:0055085 K14389
gene-evm.TU.Chr16.1297 rna-evm.model.Chr16.1297 Chr16 39689652 39725145 PREDICTED: Retinol dehydrogenase 12 nan K11161
gene-evm.TU.Chr16.1298 rna-evm.model.Chr16.1298 Chr16 39733772 39737089 PREDICTED: Endoplasmic reticulum resident protein 29 GO:0005783;GO:0005788;GO:0009306 K09586
gene-evm.TU.Chr16.1299 rna-evm.model.Chr16.1299 Chr16 39737301 39758211 PREDICTED: TBCC domain-containing protein 1 nan K16810
gene-evm.TU.Chr16.13 rna-evm.model.Chr16.13 Chr16 477931 518287 PREDICTED: Uncharacterized protein YMR196W GO:0004573;GO:0009311 K01228
gene-evm.TU.Chr16.130 rna-evm.model.Chr16.130 Chr16 4444810 4446039 PREDICTED: Somatostatin receptor type 4 GO:0004930;GO:0007186;GO:0008528;GO:0016020 K08428

For more detailed data, you can explore the Download section to access the full dataset.