CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1278 rna-evm.model.Chr16.1278 Chr16 39096326 39105857 PREDICTED: Alpha-tocopherol transfer protein-like nan K19625
gene-evm.TU.Chr16.128 rna-evm.model.Chr16.128 Chr16 4053133 4090351 PREDICTED: E3 ubiquitin-protein ligase DZIP3 GO:0042981 K10642
gene-evm.TU.Chr16.1280_evm.TU.Chr16.1281 rna-evm.model.Chr16.1280_evm.model.Chr16.1281 Chr16 39120229 39124077 PREDICTED: Neutral cholesterol ester hydrolase 1 GO:0016787 K14349
gene-evm.TU.Chr16.1282 rna-evm.model.Chr16.1282 Chr16 39126681 39133475 uncharacterized protein nan K10809
gene-evm.TU.Chr16.1283 rna-evm.model.Chr16.1283 Chr16 39138207 39139565 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr16.1286 rna-evm.model.Chr16.1286 Chr16 39177399 39202331 PREDICTED: Probable ATP-dependent RNA helicase DHX37 GO:0003676;GO:0004386;GO:0005524 K14780
gene-evm.TU.Chr16.1288 rna-evm.model.Chr16.1288 Chr16 39206522 39234269 PREDICTED: Ceramide glucosyltransferase-B GO:0016757 K00720
gene-evm.TU.Chr16.1289 rna-evm.model.Chr16.1289.1 Chr16 39242202 39329247 PREDICTED: Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type GO:0005388;GO:0005524;GO:0005783;GO:0016020;GO:0070588 K05853
gene-evm.TU.Chr16.129 rna-evm.model.Chr16.129 Chr16 4343480 4370797 PREDICTED: M-phase phosphoprotein 9 nan K16775
gene-evm.TU.Chr16.1290 rna-evm.model.Chr16.1290 Chr16 39433547 39441134 PREDICTED: Fibrinogen alpha chain nan K10104

For more detailed data, you can explore the Download section to access the full dataset.