CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1253 rna-evm.model.Chr16.1253 Chr16 38552755 38572913 uncharacterized protein GO:0005515 K24764
gene-evm.TU.Chr16.1254 rna-evm.model.Chr16.1254 Chr16 38584022 38595484 PREDICTED: Cytochrome P450 4A7 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr16.1257 rna-evm.model.Chr16.1257 Chr16 38680123 38685507 PREDICTED: Cytochrome P450 4B1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr16.1261 rna-evm.model.Chr16.1261 Chr16 38714762 38726293 PREDICTED: Cytochrome P450 4F12 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr16.1262 rna-evm.model.Chr16.1262 Chr16 38731495 38742580 PREDICTED: Cytochrome P450 4A2 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr16.1263 rna-evm.model.Chr16.1263 Chr16 38744215 38753608 PREDICTED: Phylloquinone omega-hydroxylase CYP4F2 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr16.1264 rna-evm.model.Chr16.1264 Chr16 38759819 38780606 PREDICTED: ATP-binding cassette sub-family B member 9 GO:0005524;GO:0005765;GO:0015440;GO:0015833;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05656
gene-evm.TU.Chr16.1265 rna-evm.model.Chr16.1265 Chr16 38791167 38804499 PREDICTED: SCO-spondin nan K23284
gene-evm.TU.Chr16.1266 rna-evm.model.Chr16.1266 Chr16 38807343 38812316 uncharacterized protein nan K20997
gene-evm.TU.Chr16.1267 rna-evm.model.Chr16.1267 Chr16 38819256 38833721 PREDICTED: Serine protease inhibitor Cvsi-2 nan K13516

For more detailed data, you can explore the Download section to access the full dataset.