CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2408 rna-evm.model.Chr1.2408 Chr1 75745026 75754721 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.2409 rna-evm.model.Chr1.2409 Chr1 75757466 75768747 PREDICTED: myosin heavy chain nan K20282
gene-evm.TU.Chr1.2410 rna-evm.model.Chr1.2410 Chr1 75793527 75797258 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K20361
gene-evm.TU.Chr1.2412 rna-evm.model.Chr1.2412 Chr1 75817997 75821861 PREDICTED: Zinc finger protein 862 nan K24644
gene-evm.TU.Chr1.2414 rna-evm.model.Chr1.2414 Chr1 75856403 75861329 uncharacterized protein nan K03095
gene-evm.TU.Chr1.2415 rna-evm.model.Chr1.2415 Chr1 75896688 75902293 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K05876
gene-evm.TU.Chr1.2422 rna-evm.model.Chr1.2422 Chr1 76025476 76026732 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr1.2423 rna-evm.model.Chr1.2423 Chr1 76034656 76035021 PREDICTED: Cyclin-dependent kinase-like 4 GO:0004672;GO:0005524;GO:0006468 K08884
gene-evm.TU.Chr1.2424 rna-evm.model.Chr1.2424 Chr1 76035036 76041420 PREDICTED: Probable serine/threonine-protein kinase DDB_G0271402 GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr1.2426 rna-evm.model.Chr1.2426 Chr1 76045635 76048834 PREDICTED: Probable serine/threonine-protein kinase DDB_G0267514 GO:0004672;GO:0005524;GO:0006468 K04427

For more detailed data, you can explore the Download section to access the full dataset.