CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1243 rna-evm.model.Chr16.1243 Chr16 38027189 38029183 uncharacterized protein nan K00198
gene-evm.TU.Chr16.1244 rna-evm.model.Chr16.1244 Chr16 38032137 38104342 PREDICTED: Probable E3 ubiquitin-protein ligase HECTD4 GO:0004842 K17849
gene-evm.TU.Chr16.1245 rna-evm.model.Chr16.1245 Chr16 38428025 38429194 PREDICTED: Mitotic-spindle organizing protein 2 nan K16574
gene-evm.TU.Chr16.1246 rna-evm.model.Chr16.1246 Chr16 38432132 38449027 PREDICTED: Fructose-bisphosphate aldolase GO:0004332;GO:0006096 K01623
gene-evm.TU.Chr16.1247 rna-evm.model.Chr16.1247 Chr16 38462990 38463625 PREDICTED: protocadherin Fat 1/2/3 nan K00748
gene-evm.TU.Chr16.1248 rna-evm.model.Chr16.1248 Chr16 38467866 38478012 PREDICTED: 70 kDa neurofilament protein nan K18585
gene-evm.TU.Chr16.1249 rna-evm.model.Chr16.1249 Chr16 38482296 38496845 PREDICTED: Amyloid protein-binding protein 2 GO:0005515 K25806
gene-evm.TU.Chr16.1250 rna-evm.model.Chr16.1250 Chr16 38500997 38502127 PREDICTED: dynein heavy chain-like nan K26222
gene-evm.TU.Chr16.1251 rna-evm.model.Chr16.1251 Chr16 38504765 38531161 PREDICTED: Rabankyrin-5 GO:0005515;GO:0046872 K20129
gene-evm.TU.Chr16.1252 rna-evm.model.Chr16.1252 Chr16 38531583 38549232 PREDICTED: Rabankyrin-5 GO:0005515 K20129

For more detailed data, you can explore the Download section to access the full dataset.