CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1226 rna-evm.model.Chr16.1226.2 Chr16 37186625 37215771 PREDICTED: P-selectin nan K24469
gene-evm.TU.Chr16.1227 rna-evm.model.Chr16.1227 Chr16 37226189 37226822 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07499
gene-evm.TU.Chr16.1228 rna-evm.model.Chr16.1228 Chr16 37234335 37249086 PREDICTED: Techylectin-5B nan K10104
gene-evm.TU.Chr16.1229 rna-evm.model.Chr16.1229 Chr16 37279286 37283243 PREDICTED: Allatostatin-A receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr16.1230 rna-evm.model.Chr16.1230 Chr16 37324173 37325969 PREDICTED: Sodium-coupled monocarboxylate transporter 2 GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr16.1231 rna-evm.model.Chr16.1231 Chr16 37507171 37508217 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr16.1233 rna-evm.model.Chr16.1233 Chr16 37549943 37562201 PREDICTED: Probable cysteine desulfurase nan K11717
gene-evm.TU.Chr16.1234 rna-evm.model.Chr16.1234 Chr16 37570807 37572374 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714
gene-evm.TU.Chr16.1240 rna-evm.model.Chr16.1240 Chr16 37856615 37859604 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K11502
gene-evm.TU.Chr16.1242 rna-evm.model.Chr16.1242 Chr16 37875189 37904970 PREDICTED: Protein unc-93 homolog A nan K26151

For more detailed data, you can explore the Download section to access the full dataset.