CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1213 rna-evm.model.Chr16.1213 Chr16 36758176 36769279 PREDICTED: Asparagine synthetase [glutamine-hydrolyzing] GO:0004066;GO:0006529 K01953
gene-evm.TU.Chr16.1215 rna-evm.model.Chr16.1215 Chr16 36783161 36798870 PREDICTED: Asparagine synthetase [glutamine-hydrolyzing] GO:0004066;GO:0006529 K01953
gene-evm.TU.Chr16.1216 rna-evm.model.Chr16.1216 Chr16 36802763 36810108 PREDICTED: B-cell CLL/lymphoma 7 protein family member B nan K25605
gene-evm.TU.Chr16.1219 rna-evm.model.Chr16.1219 Chr16 36911866 36933593 PREDICTED: UPF0764 protein C16orf89 homolog nan nan
gene-evm.TU.Chr16.1220 rna-evm.model.Chr16.1220 Chr16 36952008 36956339 PREDICTED: Sigma intracellular receptor 2 nan K26171
gene-evm.TU.Chr16.1221 rna-evm.model.Chr16.1221 Chr16 36957602 36959759 PREDICTED: Sigma intracellular receptor 2 nan K26171
gene-evm.TU.Chr16.1222 rna-evm.model.Chr16.1222 Chr16 36962506 36975565 PREDICTED: Serine beta-lactamase-like protein LACTB, mitochondrial nan K17382
gene-evm.TU.Chr16.1223 rna-evm.model.Chr16.1223 Chr16 37140966 37147630 PREDICTED: Galanin-like G-protein coupled receptor npr-9 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr16.1224 rna-evm.model.Chr16.1224 Chr16 37163525 37167472 PREDICTED: Short-wave-sensitive opsin 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr16.1225 rna-evm.model.Chr16.1225 Chr16 37184601 37185176 PREDICTED: Ribosome-binding protein 1 nan K24296

For more detailed data, you can explore the Download section to access the full dataset.