CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1191 rna-evm.model.Chr16.1191 Chr16 36205136 36210207 PREDICTED: adaptor protein CIKS nan K01011
gene-evm.TU.Chr16.1192 rna-evm.model.Chr16.1192 Chr16 36318457 36335937 PREDICTED: Filamin-B GO:0005515 K04437
gene-evm.TU.Chr16.1193 rna-evm.model.Chr16.1193 Chr16 36343066 36350726 PREDICTED: Uncharacterized protein BM_BM17856 nan K23410
gene-evm.TU.Chr16.1194 rna-evm.model.Chr16.1194 Chr16 36353453 36364658 PREDICTED: Leukocyte receptor cluster member 1 nan K13123
gene-evm.TU.Chr16.1195 rna-evm.model.Chr16.1195 Chr16 36364884 36379259 PREDICTED: Translation initiation factor IF-2 nan K12965
gene-evm.TU.Chr16.1196 rna-evm.model.Chr16.1196 Chr16 36385575 36395420 PREDICTED: Mediator of RNA polymerase II transcription subunit 19 GO:0003712;GO:0006357;GO:0016592 K15137
gene-evm.TU.Chr16.1197 rna-evm.model.Chr16.1197 Chr16 36395592 36415546 PREDICTED: Vitamin K epoxide reductase complex subunit 1-like protein 1 nan K05357
gene-evm.TU.Chr16.1198 rna-evm.model.Chr16.1198 Chr16 36420078 36437615 PREDICTED: Aspartate--tRNA ligase, mitochondrial GO:0000166;GO:0003676;GO:0004812;GO:0005524;GO:0006418;GO:0016874 K01876
gene-evm.TU.Chr16.1199 rna-evm.model.Chr16.1199 Chr16 36444098 36472509 PREDICTED: Piwi-like protein 1 GO:0003676;GO:0005515;GO:0007286;GO:0034584 K02156
gene-evm.TU.Chr16.12 rna-evm.model.Chr16.12 Chr16 449728 474362 PREDICTED: Arylsulfatase J GO:0008484 K12375

For more detailed data, you can explore the Download section to access the full dataset.