CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1200 rna-evm.model.Chr16.1200 Chr16 36468288 36470700 PREDICTED: PiggyBac transposable element-derived protein 4 nan K18464
gene-evm.TU.Chr16.1201 rna-evm.model.Chr16.1201 Chr16 36482236 36506985 PREDICTED: Cilia- and flagella-associated protein 251 GO:0005515 K24228
gene-evm.TU.Chr16.1202 rna-evm.model.Chr16.1202 Chr16 36510616 36514021 PREDICTED: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 GO:0070988 K10766
gene-evm.TU.Chr16.1203 rna-evm.model.Chr16.1203 Chr16 36519471 36536358 uncharacterized protein nan K13681
gene-evm.TU.Chr16.1204 rna-evm.model.Chr16.1204 Chr16 36550118 36552437 PREDICTED: C-type lectin domain family 3 member A nan K10059
gene-evm.TU.Chr16.1205 rna-evm.model.Chr16.1205 Chr16 36556571 36562904 uncharacterized protein nan K04008
gene-evm.TU.Chr16.1209 rna-evm.model.Chr16.1209 Chr16 36619804 36620349 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr16.1210 rna-evm.model.Chr16.1210 Chr16 36698678 36719975 PREDICTED: Sodium/glucose cotransporter 4 GO:0016020;GO:0022857;GO:0055085 K14389
gene-evm.TU.Chr16.1211 rna-evm.model.Chr16.1211 Chr16 36723251 36743255 uncharacterized protein nan nan
gene-evm.TU.Chr16.1212 rna-evm.model.Chr16.1212 Chr16 36744914 36750201 PREDICTED: Phosphoenolpyruvate phosphomutase nan K01841

For more detailed data, you can explore the Download section to access the full dataset.