CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.118 rna-evm.model.Chr16.118 Chr16 3795305 3800318 PREDICTED: Zinc finger MYM-type protein 2 nan K24675
gene-evm.TU.Chr16.1180 rna-evm.model.Chr16.1180 Chr16 36042547 36043602 PREDICTED: C-X-C chemokine receptor type 5 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr16.1181 rna-evm.model.Chr16.1181 Chr16 36052858 36053901 PREDICTED: Thyrotropin-releasing hormone receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr16.1182 rna-evm.model.Chr16.1182 Chr16 36058010 36076046 PREDICTED: NACHT and WD repeat domain-containing protein 2 nan K24734
gene-evm.TU.Chr16.1183 rna-evm.model.Chr16.1183 Chr16 36100919 36102546 PREDICTED: fatty acid-binding protein 3, muscle and heart nan K08752
gene-evm.TU.Chr16.1184_evm.TU.Chr16.1185 rna-evm.model.Chr16.1184_evm.model.Chr16.1185 Chr16 36110165 36126494 PREDICTED: Gametogenetin-binding protein 2 nan K16726
gene-evm.TU.Chr16.1186 rna-evm.model.Chr16.1186 Chr16 36131544 36137878 uncharacterized protein nan nan
gene-evm.TU.Chr16.1187 rna-evm.model.Chr16.1187 Chr16 36151773 36172638 PREDICTED: 14-3-3 protein epsilon GO:0019904 K16197
gene-evm.TU.Chr16.1189 rna-evm.model.Chr16.1189 Chr16 36187353 36187730 PREDICTED: Type I iodothyronine deiodinase (Fragment) GO:0004800;GO:0055114 K01562
gene-evm.TU.Chr16.1190 rna-evm.model.Chr16.1190 Chr16 36195477 36199793 PREDICTED: Thioredoxin domain-containing protein 17 nan K12571

For more detailed data, you can explore the Download section to access the full dataset.