CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.117 rna-evm.model.Chr16.117 Chr16 3623400 3684598 PREDICTED: Zinc transporter ZIP10 GO:0016020;GO:0030001;GO:0046873;GO:0055085 K14716
gene-evm.TU.Chr16.1171 rna-evm.model.Chr16.1171 Chr16 35838030 35839675 PREDICTED: X-box-binding protein 1 GO:0003700;GO:0006355 K09027
gene-evm.TU.Chr16.1172 rna-evm.model.Chr16.1172 Chr16 35848494 35852562 PREDICTED: Sesquipedalian-1 nan K23791
gene-evm.TU.Chr16.1173 rna-evm.model.Chr16.1173 Chr16 35852671 35907265 PREDICTED: Unconventional myosin-Ic GO:0003774;GO:0005515;GO:0005524;GO:0016459 K10356
gene-evm.TU.Chr16.1174 rna-evm.model.Chr16.1174 Chr16 35923798 35934987 PREDICTED: myosin IX GO:0046983 K20394
gene-evm.TU.Chr16.1175 rna-evm.model.Chr16.1175 Chr16 35945717 35960115 uncharacterized protein nan K04722
gene-evm.TU.Chr16.1176 rna-evm.model.Chr16.1176 Chr16 35961551 35962027 PREDICTED: G-protein coupled receptor daf-37 GO:0004930;GO:0007186;GO:0008528;GO:0016020 K08428
gene-evm.TU.Chr16.1177 rna-evm.model.Chr16.1177 Chr16 35967694 35991025 PREDICTED: Vacuole membrane protein 1 nan K21248
gene-evm.TU.Chr16.1178 rna-evm.model.Chr16.1178 Chr16 36000042 36024938 PREDICTED: E3 ubiquitin-protein ligase RNF25 GO:0005515;GO:0061630 K10640
gene-evm.TU.Chr16.1179 rna-evm.model.Chr16.1179 Chr16 36032509 36033564 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04284

For more detailed data, you can explore the Download section to access the full dataset.