CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1157 rna-evm.model.Chr16.1157 Chr16 35508265 35518191 PREDICTED: Low-density lipoprotein receptor-related protein 3 GO:0005515 K20050
gene-evm.TU.Chr16.116 rna-evm.model.Chr16.116 Chr16 3567460 3568122 uncharacterized protein nan nan
gene-evm.TU.Chr16.1161 rna-evm.model.Chr16.1161 Chr16 35675241 35687542 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr16.1162 rna-evm.model.Chr16.1162 Chr16 35694223 35705824 PREDICTED: RNA N6-adenosine-methyltransferase mettl16 GO:0008168 K11393
gene-evm.TU.Chr16.1163 rna-evm.model.Chr16.1163 Chr16 35708548 35715819 PREDICTED: Fatty acid-binding protein homolog 6 GO:0008289 K08753
gene-evm.TU.Chr16.1164 rna-evm.model.Chr16.1164 Chr16 35719540 35719956 uncharacterized protein nan K23449
gene-evm.TU.Chr16.1165 rna-evm.model.Chr16.1165 Chr16 35718176 35734364 PREDICTED: Kelch-like protein 3 GO:0003676;GO:0005515 K10463
gene-evm.TU.Chr16.1166 rna-evm.model.Chr16.1166 Chr16 35738791 35740326 PREDICTED: Mitochondrial import inner membrane translocase subunit Tim10 GO:0042719;GO:0045039 K17778
gene-evm.TU.Chr16.1167 rna-evm.model.Chr16.1167 Chr16 35740425 35752862 PREDICTED: TRAF-type zinc finger domain-containing protein 1 GO:0008270 K09849
gene-evm.TU.Chr16.1169 rna-evm.model.Chr16.1169 Chr16 35776321 35780591 PREDICTED: Protein-tyrosine sulfotransferase 2 GO:0006478;GO:0008476 K01021

For more detailed data, you can explore the Download section to access the full dataset.