CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1145 rna-evm.model.Chr16.1145.1 Chr16 35204918 35263243 PREDICTED: Transient receptor potential cation channel subfamily M member-like 2 GO:0005216;GO:0005261;GO:0006811;GO:0006812;GO:0006979;GO:0016020;GO:0016020;GO:0034220;GO:0047631;GO:0055085 K04977
gene-evm.TU.Chr16.1146 rna-evm.model.Chr16.1146 Chr16 35286133 35295295 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr16.1147 rna-evm.model.Chr16.1147 Chr16 35315382 35323234 PREDICTED: Mannan polymerase complex subunit mnn9 nan K05529
gene-evm.TU.Chr16.1148_evm.TU.Chr16.1149 rna-evm.model.Chr16.1148_evm.model.Chr16.1149 Chr16 35326420 35364054 PREDICTED: Uncharacterized protein KIAA1841 nan K10455
gene-evm.TU.Chr16.1150 rna-evm.model.Chr16.1150 Chr16 35364281 35382695 PREDICTED: Nucleolar complex protein 4 homolog B GO:0042254 K14771
gene-evm.TU.Chr16.1151 rna-evm.model.Chr16.1151 Chr16 35386328 35394010 PREDICTED: Neuropilin and tolloid-like protein 2 GO:0005515 K24359
gene-evm.TU.Chr16.1152 rna-evm.model.Chr16.1152 Chr16 35399214 35402816 PREDICTED: Tolloid-like protein 2 GO:0005515 K24359
gene-evm.TU.Chr16.1154 rna-evm.model.Chr16.1154 Chr16 35410142 35415928 PREDICTED: Low-density lipoprotein receptor-related protein 12 GO:0005515 K24359
gene-evm.TU.Chr16.1155 rna-evm.model.Chr16.1155 Chr16 35495475 35495909 PREDICTED: collagen triple helix repeat protein, partial nan K11956
gene-evm.TU.Chr16.1156 rna-evm.model.Chr16.1156 Chr16 35496189 35506678 PREDICTED: Low-density lipoprotein receptor-related protein 12 GO:0005515 K24359

For more detailed data, you can explore the Download section to access the full dataset.