CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1133 rna-evm.model.Chr16.1133 Chr16 34909623 34956023 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr16.1134 rna-evm.model.Chr16.1134 Chr16 34968569 34969924 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K24394
gene-evm.TU.Chr16.1136 rna-evm.model.Chr16.1136 Chr16 35034120 35042922 PREDICTED: Protein GUCD1 nan K13439
gene-evm.TU.Chr16.1137 rna-evm.model.Chr16.1137 Chr16 35055221 35070382 PREDICTED: GPI ethanolamine phosphate transferase 1 GO:0003824;GO:0005789;GO:0006506;GO:0016740;GO:0051377 K05285
gene-evm.TU.Chr16.1138 rna-evm.model.Chr16.1138 Chr16 35070518 35079542 PREDICTED: GPI ethanolamine phosphate transferase 1 GO:0005789;GO:0006506;GO:0016740;GO:0051377 K05285
gene-evm.TU.Chr16.1139 rna-evm.model.Chr16.1139 Chr16 35082842 35090646 PREDICTED: von Willebrand factor A domain-containing protein 2 GO:0005509 K19601
gene-evm.TU.Chr16.114 rna-evm.model.Chr16.114 Chr16 3502558 3506807 uncharacterized protein nan nan
gene-evm.TU.Chr16.1141 rna-evm.model.Chr16.1141 Chr16 35099119 35107921 uncharacterized protein nan K02382
gene-evm.TU.Chr16.1142 rna-evm.model.Chr16.1142.1 Chr16 35125096 35136246 uncharacterized protein GO:0005515;GO:0007165 K23368
gene-evm.TU.Chr16.1143_evm.TU.Chr16.1144 rna-evm.model.Chr16.1143_evm.model.Chr16.1144 Chr16 35162634 35184748 PREDICTED: Zinc finger CCHC domain-containing protein 8 nan K13128

For more detailed data, you can explore the Download section to access the full dataset.