CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2390 rna-evm.model.Chr1.2390 Chr1 74898978 74907069 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] GO:0005741;GO:0035694 K16758
gene-evm.TU.Chr1.2391 rna-evm.model.Chr1.2391 Chr1 74911786 74920655 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.2392 rna-evm.model.Chr1.2392 Chr1 74926287 74941905 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr1.2395 rna-evm.model.Chr1.2395 Chr1 75198762 75218601 PREDICTED: Mariner Mos1 transposase nan K21406
gene-evm.TU.Chr1.24 rna-evm.model.Chr1.24 Chr1 848615 849216 uncharacterized protein nan K19993
gene-evm.TU.Chr1.2402 rna-evm.model.Chr1.2402 Chr1 75580414 75587788 PREDICTED: Transmembrane protein 272 nan nan
gene-evm.TU.Chr1.2403 rna-evm.model.Chr1.2403 Chr1 75622627 75627120 PREDICTED: Transmembrane protein 272 nan K26745
gene-evm.TU.Chr1.2405 rna-evm.model.Chr1.2405 Chr1 75709361 75712637 PREDICTED: Transmembrane protein 272 nan K26745
gene-evm.TU.Chr1.2406 rna-evm.model.Chr1.2406 Chr1 75725513 75732531 PREDICTED: Tumor necrosis factor receptor superfamily member 16 GO:0005515 K02583
gene-evm.TU.Chr1.2407 rna-evm.model.Chr1.2407 Chr1 75740485 75743560 PREDICTED: Tumor necrosis factor receptor superfamily member 16 GO:0005515 K02583

For more detailed data, you can explore the Download section to access the full dataset.