CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1123 rna-evm.model.Chr16.1123 Chr16 34634781 34672322 PREDICTED: Sodium- and chloride-dependent GABA transporter ine GO:0016020 K05039
gene-evm.TU.Chr16.1124 rna-evm.model.Chr16.1124 Chr16 34682899 34694209 PREDICTED: Calpain-A GO:0004198;GO:0006508 K08585
gene-evm.TU.Chr16.1125 rna-evm.model.Chr16.1125 Chr16 34704043 34718909 PREDICTED: Digestive cysteine proteinase 2 GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr16.1126 rna-evm.model.Chr16.1126 Chr16 34727077 34730341 uncharacterized protein GO:0046872 K14321
gene-evm.TU.Chr16.1127 rna-evm.model.Chr16.1127 Chr16 34744682 34776923 PREDICTED: Sarcalumenin GO:0005525 K12483
gene-evm.TU.Chr16.1128 rna-evm.model.Chr16.1128 Chr16 34785716 34826933 PREDICTED: Integrator complex subunit 2 GO:0016180;GO:0032039 K13139
gene-evm.TU.Chr16.1129 rna-evm.model.Chr16.1129 Chr16 34827168 34832419 PREDICTED: Mediator of RNA polymerase II transcription subunit 31 GO:0003712;GO:0006355;GO:0016592 K15153
gene-evm.TU.Chr16.113 rna-evm.model.Chr16.113 Chr16 3499541 3500829 PREDICTED: Protein pelota homolog GO:0070481;GO:0070966;GO:0071025 K06965
gene-evm.TU.Chr16.1130 rna-evm.model.Chr16.1130 Chr16 34834993 34853810 PREDICTED: Peroxisomal acyl-coenzyme A oxidase 3 GO:0003997;GO:0005777;GO:0006635;GO:0016627;GO:0055114 K00232
gene-evm.TU.Chr16.1131 rna-evm.model.Chr16.1131 Chr16 34867697 34878490 PREDICTED: Tctex1 domain-containing protein 1-B (Fragment) nan K25420

For more detailed data, you can explore the Download section to access the full dataset.