CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.111 rna-evm.model.Chr16.111 Chr16 3451283 3457071 PREDICTED: myotubularin-related protein 10/11/12 nan K21037
gene-evm.TU.Chr16.1110 rna-evm.model.Chr16.1110 Chr16 34275318 34279034 PREDICTED: Vacuolar protein sorting-associated protein 29 GO:0030904;GO:0042147 K18467
gene-evm.TU.Chr16.1111 rna-evm.model.Chr16.1111 Chr16 34285222 34326500 uncharacterized protein nan K10624
gene-evm.TU.Chr16.1112 rna-evm.model.Chr16.1112 Chr16 34333036 34349182 PREDICTED: AH receptor-interacting protein GO:0005515 K17767
gene-evm.TU.Chr16.1113 rna-evm.model.Chr16.1113 Chr16 34341893 34342726 PREDICTED: coatomer subunit beta' nan K23792
gene-evm.TU.Chr16.1114 rna-evm.model.Chr16.1114 Chr16 34359514 34368698 PREDICTED: Ras-related protein Rab-35 GO:0003924;GO:0005525 K07876
gene-evm.TU.Chr16.1116 rna-evm.model.Chr16.1116 Chr16 34390761 34416705 PREDICTED: Centromere protein J nan K11502
gene-evm.TU.Chr16.1117 rna-evm.model.Chr16.1117 Chr16 34488653 34490365 PREDICTED: Proton-coupled folate transporter GO:0016020;GO:0055085 K14613
gene-evm.TU.Chr16.1120 rna-evm.model.Chr16.1120 Chr16 34540283 34541784 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676 K11496
gene-evm.TU.Chr16.1121 rna-evm.model.Chr16.1121 Chr16 34571919 34587875 uncharacterized protein nan K24274

For more detailed data, you can explore the Download section to access the full dataset.