CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1100 rna-evm.model.Chr16.1100 Chr16 33951238 33952818 uncharacterized protein GO:0008270 K25276
gene-evm.TU.Chr16.1101 rna-evm.model.Chr16.1101 Chr16 33963029 34017317 PREDICTED: NACHT and WD repeat domain-containing protein 2 GO:0005515 K24734
gene-evm.TU.Chr16.1102 rna-evm.model.Chr16.1102 Chr16 34031477 34038143 PREDICTED: centromere protein T nan K25270
gene-evm.TU.Chr16.1103 rna-evm.model.Chr16.1103 Chr16 34047722 34048577 PREDICTED: Galactose-3-O-sulfotransferase 3 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K09676
gene-evm.TU.Chr16.1104 rna-evm.model.Chr16.1104 Chr16 34055680 34063564 PREDICTED: Monomeric sarcosine oxidase GO:0016491;GO:0055114 K00301
gene-evm.TU.Chr16.1105 rna-evm.model.Chr16.1105 Chr16 34064608 34145362 PREDICTED: NACHT and WD repeat domain-containing protein 2 GO:0005515 K24734
gene-evm.TU.Chr16.1106 rna-evm.model.Chr16.1106 Chr16 34162162 34191383 PREDICTED: Clustered mitochondria protein homolog nan K03255
gene-evm.TU.Chr16.1107 rna-evm.model.Chr16.1107 Chr16 34206804 34230486 PREDICTED: Lissencephaly-1 homolog GO:0005515 K16794
gene-evm.TU.Chr16.1108 rna-evm.model.Chr16.1108 Chr16 34234427 34241157 PREDICTED: Protein phosphatase PTC7 homolog GO:0003824 K17508
gene-evm.TU.Chr16.1109 rna-evm.model.Chr16.1109 Chr16 34252230 34275174 PREDICTED: Cell cycle checkpoint control protein RAD9A GO:0000077;GO:0030896 K10995

For more detailed data, you can explore the Download section to access the full dataset.