CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1091 rna-evm.model.Chr16.1091 Chr16 33741405 33758467 PREDICTED: Actin-related protein 2/3 complex subunit 3 GO:0005856;GO:0005885;GO:0030833;GO:0034314 K05756
gene-evm.TU.Chr16.1092 rna-evm.model.Chr16.1092 Chr16 33760728 33774911 PREDICTED: Ankyrin-2 nan K06903
gene-evm.TU.Chr16.1093 rna-evm.model.Chr16.1093 Chr16 33776010 33790137 PREDICTED: Ankyrin repeat domain-containing protein 13D GO:0005515 K21437
gene-evm.TU.Chr16.1094 rna-evm.model.Chr16.1094 Chr16 33796358 33830361 PREDICTED: ARF GTPase-activating protein GIT2 GO:0005096;GO:0005515 K12487
gene-evm.TU.Chr16.1095 rna-evm.model.Chr16.1095 Chr16 33864826 33891140 PREDICTED: Potassium voltage-gated channel protein Shaw GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04890
gene-evm.TU.Chr16.1097 rna-evm.model.Chr16.1097 Chr16 33915484 33916916 PREDICTED: Potassium voltage-gated channel subfamily A member 1 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0055085 K04887
gene-evm.TU.Chr16.1098 rna-evm.model.Chr16.1098 Chr16 33918395 33926639 PREDICTED: Potassium voltage-gated channel protein Shaw GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr16.1099 rna-evm.model.Chr16.1099 Chr16 33928273 33948077 PREDICTED: GTPase Era, mitochondrial GO:0005525 K03595
gene-evm.TU.Chr16.11 rna-evm.model.Chr16.11 Chr16 418717 421469 PREDICTED: Galactose-3-O-sulfotransferase 2 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr16.110 rna-evm.model.Chr16.110 Chr16 3426373 3427152 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.