CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1082 rna-evm.model.Chr16.1082 Chr16 33535828 33539674 PREDICTED: Ninjurin-1 GO:0007155;GO:0016020;GO:0042246 K02275
gene-evm.TU.Chr16.1083 rna-evm.model.Chr16.1083 Chr16 33547437 33552646 PREDICTED: Ninjurin-1 GO:0007155;GO:0016020;GO:0042246 K16273
gene-evm.TU.Chr16.1084 rna-evm.model.Chr16.1084 Chr16 33565367 33655948 PREDICTED: Beta-adrenergic receptor kinase 2 GO:0004672;GO:0004674;GO:0004703;GO:0005524;GO:0006468;GO:0007165 K00910
gene-evm.TU.Chr16.1085 rna-evm.model.Chr16.1085 Chr16 33675073 33676870 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr16.1086 rna-evm.model.Chr16.1086 Chr16 33689856 33691756 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr16.1087 rna-evm.model.Chr16.1087 Chr16 33709878 33712877 PREDICTED: Galactose-3-O-sulfotransferase 3 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr16.1088 rna-evm.model.Chr16.1088 Chr16 33722155 33723309 PREDICTED: Galactose-3-O-sulfotransferase 3 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr16.1089 rna-evm.model.Chr16.1089 Chr16 33725854 33727014 PREDICTED: Galactose-3-O-sulfotransferase 3 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K09676
gene-evm.TU.Chr16.109 rna-evm.model.Chr16.109 Chr16 3396013 3404636 PREDICTED: Mannose-binding protein C nan K06560
gene-evm.TU.Chr16.1090 rna-evm.model.Chr16.1090 Chr16 33732780 33738792 PREDICTED: GPN-loop GTPase 3 nan K24104

For more detailed data, you can explore the Download section to access the full dataset.