CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1070 rna-evm.model.Chr16.1070 Chr16 33112005 33119386 uncharacterized protein nan nan
gene-evm.TU.Chr16.1071 rna-evm.model.Chr16.1071 Chr16 33132221 33185611 PREDICTED: Carbohydrate-responsive element-binding protein GO:0000981;GO:0006355;GO:0046983;GO:1900402 K09113
gene-evm.TU.Chr16.1072 rna-evm.model.Chr16.1072 Chr16 33201162 33226722 PREDICTED: Metabotropic glutamate receptor 7 GO:0004930;GO:0007186;GO:0016020 K04609
gene-evm.TU.Chr16.1073 rna-evm.model.Chr16.1073 Chr16 33232939 33277623 PREDICTED: Metabotropic glutamate receptor 3 GO:0004930;GO:0007186;GO:0016020 K04605
gene-evm.TU.Chr16.1074 rna-evm.model.Chr16.1074 Chr16 33287026 33313205 PREDICTED: Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A GO:0046856 K24222
gene-evm.TU.Chr16.1075 rna-evm.model.Chr16.1075 Chr16 33324313 33326449 PREDICTED: Leishmanolysin-like peptidase 2 GO:0004222;GO:0006508;GO:0007155;GO:0016020 K13539
gene-evm.TU.Chr16.1076 rna-evm.model.Chr16.1076 Chr16 33324037 33343972 PREDICTED: RPA-interacting protein A nan K19347
gene-evm.TU.Chr16.1077 rna-evm.model.Chr16.1077 Chr16 33490341 33508695 PREDICTED: Ribosomal protein S6 kinase beta-1 GO:0004672;GO:0004674;GO:0005524;GO:0006468 K04688
gene-evm.TU.Chr16.108 rna-evm.model.Chr16.108 Chr16 3372521 3388196 PREDICTED: Max-binding protein MNT GO:0046983 K09115
gene-evm.TU.Chr16.1081 rna-evm.model.Chr16.1081 Chr16 33522513 33524782 PREDICTED: Ninjurin-2 GO:0007155;GO:0016020;GO:0042246 K02275

For more detailed data, you can explore the Download section to access the full dataset.