CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1058 rna-evm.model.Chr16.1058 Chr16 32400587 32408005 uncharacterized protein nan nan
gene-evm.TU.Chr16.106 rna-evm.model.Chr16.106 Chr16 3277949 3345104 PREDICTED: Small G protein signaling modulator 1 nan K21847
gene-evm.TU.Chr16.1060 rna-evm.model.Chr16.1060 Chr16 32679137 32759028 PREDICTED: Universal stress protein in QAH/OAS sulfhydrylase 3'region nan K06149
gene-evm.TU.Chr16.1062 rna-evm.model.Chr16.1062 Chr16 32783484 32786295 PREDICTED: Universal stress protein Sll1388 nan K06149
gene-evm.TU.Chr16.1063 rna-evm.model.Chr16.1063 Chr16 32811594 32817993 PREDICTED: Universal stress protein in QAH/OAS sulfhydrylase 3'region nan K06149
gene-evm.TU.Chr16.1064 rna-evm.model.Chr16.1064 Chr16 32821083 32824034 PREDICTED: Universal stress protein MJ0531 nan K06149
gene-evm.TU.Chr16.1067 rna-evm.model.Chr16.1067 Chr16 33037839 33097933 PREDICTED: GAS2-like protein pickled eggs GO:0005515;GO:0008017 K24627
gene-evm.TU.Chr16.1068 rna-evm.model.Chr16.1068 Chr16 33098726 33099894 uncharacterized protein nan K15119
gene-evm.TU.Chr16.1069 rna-evm.model.Chr16.1069 Chr16 33102096 33108850 PREDICTED: Ester hydrolase C11orf54 homolog GO:0005634 nan
gene-evm.TU.Chr16.107 rna-evm.model.Chr16.107 Chr16 3361993 3372165 PREDICTED: Transmembrane protein 248 nan nan

For more detailed data, you can explore the Download section to access the full dataset.