CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1041 rna-evm.model.Chr16.1041 Chr16 31933956 31934322 PREDICTED: Muscle, skeletal receptor tyrosine protein kinase nan K01315
gene-evm.TU.Chr16.1042 rna-evm.model.Chr16.1042 Chr16 31990035 32002561 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020 K04307
gene-evm.TU.Chr16.1047 rna-evm.model.Chr16.1047 Chr16 32112623 32114880 PREDICTED: Galactose-3-O-sulfotransferase 3 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr16.1048 rna-evm.model.Chr16.1048 Chr16 32118375 32124152 PREDICTED: Estrogen sulfotransferase GO:0008146 K01025
gene-evm.TU.Chr16.105 rna-evm.model.Chr16.105 Chr16 3257050 3277497 PREDICTED: Vacuolar protein sorting-associated protein 33A GO:0006904;GO:0016192 K20182
gene-evm.TU.Chr16.1051 rna-evm.model.Chr16.1051 Chr16 32196224 32200042 PREDICTED: Muscle, skeletal receptor tyrosine protein kinase nan K24469
gene-evm.TU.Chr16.1054 rna-evm.model.Chr16.1054 Chr16 32245924 32292244 PREDICTED: Uncharacterized WD repeat-containing protein alr3466 GO:0005515 K24740
gene-evm.TU.Chr16.1055 rna-evm.model.Chr16.1055 Chr16 32292454 32307571 PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial nan K09458
gene-evm.TU.Chr16.1056 rna-evm.model.Chr16.1056 Chr16 32310283 32313927 uncharacterized protein GO:0005892 K11213
gene-evm.TU.Chr16.1057 rna-evm.model.Chr16.1057 Chr16 32350824 32353566 PREDICTED: Universal stress protein in QAH/OAS sulfhydrylase 3'region nan K06149

For more detailed data, you can explore the Download section to access the full dataset.