CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.103 rna-evm.model.Chr16.103 Chr16 3106499 3251259 PREDICTED: Fanconi anemia group J protein homolog GO:0003676;GO:0003677;GO:0003678;GO:0005524;GO:0006139;GO:0004386;GO:0016818 K15362
gene-evm.TU.Chr16.1030 rna-evm.model.Chr16.1030 Chr16 31733320 31734521 PREDICTED: tRNA-specific adenosine deaminase 2 GO:0002100;GO:0008251 K15441
gene-evm.TU.Chr16.1031 rna-evm.model.Chr16.1031 Chr16 31774814 31783489 uncharacterized protein GO:0005515;GO:0007165 K02832
gene-evm.TU.Chr16.1032 rna-evm.model.Chr16.1032 Chr16 31801081 31812301 PREDICTED: Serine--tRNA ligase, mitochondrial GO:0000166;GO:0004828;GO:0005524;GO:0006434 K01875
gene-evm.TU.Chr16.1033 rna-evm.model.Chr16.1033 Chr16 31816567 31834538 uncharacterized protein GO:0005515;GO:0007165 K02832
gene-evm.TU.Chr16.1034 rna-evm.model.Chr16.1034 Chr16 31864664 31869863 PREDICTED: Coiled-coil domain-containing protein 92 nan K16452
gene-evm.TU.Chr16.1035 rna-evm.model.Chr16.1035 Chr16 31870079 31885533 PREDICTED: E3 ubiquitin-protein ligase DTX4 GO:0007219;GO:0008270;GO:0016567 K06058
gene-evm.TU.Chr16.1037 rna-evm.model.Chr16.1037 Chr16 31903613 31907565 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0005515;GO:0051260 K21917
gene-evm.TU.Chr16.1038 rna-evm.model.Chr16.1038 Chr16 31911835 31917354 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0005515;GO:0051260 K21917
gene-evm.TU.Chr16.1040 rna-evm.model.Chr16.1040 Chr16 31931608 31933372 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676;GO:0003677 K11496

For more detailed data, you can explore the Download section to access the full dataset.