CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1018 rna-evm.model.Chr16.1018 Chr16 31341800 31347708 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K11810
gene-evm.TU.Chr16.1019 rna-evm.model.Chr16.1019 Chr16 31360070 31388259 uncharacterized protein nan K22684
gene-evm.TU.Chr16.102 rna-evm.model.Chr16.102 Chr16 3096704 3100803 PREDICTED: Fanconi anemia group J protein homolog GO:0005524 K15362
gene-evm.TU.Chr16.1021 rna-evm.model.Chr16.1021 Chr16 31400839 31417812 PREDICTED: Wall-associated receptor kinase-like 17 GO:0004672;GO:0005524;GO:0006468 K04733
gene-evm.TU.Chr16.1022 rna-evm.model.Chr16.1022 Chr16 31419643 31473901 uncharacterized protein nan K11685
gene-evm.TU.Chr16.1023 rna-evm.model.Chr16.1023 Chr16 31541641 31570640 PREDICTED: RING-type E3 ubiquitin-protein ligase PPIL2 GO:0000413;GO:0003755;GO:0004842;GO:0016567 K10598
gene-evm.TU.Chr16.1024 rna-evm.model.Chr16.1024 Chr16 31570814 31584808 PREDICTED: Ribosomal protein S6 kinase-related protein GO:0004672;GO:0005524;GO:0006468 K17529
gene-evm.TU.Chr16.1027 rna-evm.model.Chr16.1027 Chr16 31600415 31603019 uncharacterized protein nan nan
gene-evm.TU.Chr16.1028 rna-evm.model.Chr16.1028 Chr16 31604487 31619356 PREDICTED: Sodium/glucose cotransporter 4 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr16.1029 rna-evm.model.Chr16.1029 Chr16 31728088 31730933 PREDICTED: Caprin-2 nan K23284

For more detailed data, you can explore the Download section to access the full dataset.