CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2380 rna-evm.model.Chr1.2380 Chr1 74727227 74734233 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005509;GO:0005515 K22615
gene-evm.TU.Chr1.2381 rna-evm.model.Chr1.2381 Chr1 74753667 74754026 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] GO:0016020;GO:0030001;GO:0046873;GO:0055085 K22804
gene-evm.TU.Chr1.2382 rna-evm.model.Chr1.2382 Chr1 74755176 74766639 PREDICTED: Post-GPI attachment to proteins factor 2 GO:0000139 K23552
gene-evm.TU.Chr1.2383 rna-evm.model.Chr1.2383 Chr1 74791898 74800668 PREDICTED: Neuropilin-1 nan K14616
gene-evm.TU.Chr1.2384 rna-evm.model.Chr1.2384 Chr1 74805453 74810815 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005509;GO:0005515 K22615
gene-evm.TU.Chr1.2385 rna-evm.model.Chr1.2385 Chr1 74815302 74822102 PREDICTED: Protein PIH1D3 nan K24253
gene-evm.TU.Chr1.2386 rna-evm.model.Chr1.2386 Chr1 74823681 74834586 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005509;GO:0005515 K22615
gene-evm.TU.Chr1.2388 rna-evm.model.Chr1.2388 Chr1 74865869 74888095 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K11500
gene-evm.TU.Chr1.2389 rna-evm.model.Chr1.2389 Chr1 74891282 74894577 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.239 rna-evm.model.Chr1.239 Chr1 7126806 7136089 PREDICTED: Receptor-type tyrosine-protein phosphatase kappa GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776

For more detailed data, you can explore the Download section to access the full dataset.