CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1008 rna-evm.model.Chr16.1008 Chr16 31040107 31109483 PREDICTED: Neurofibromin GO:0043087 K08052
gene-evm.TU.Chr16.1009 rna-evm.model.Chr16.1009 Chr16 31123426 31143748 PREDICTED: Protein spinster homolog 1 GO:0016020;GO:0055085 K23677
gene-evm.TU.Chr16.1010 rna-evm.model.Chr16.1010 Chr16 31154093 31164024 PREDICTED: Trypsin I-P38 GO:0004252;GO:0006508 K01340
gene-evm.TU.Chr16.1011 rna-evm.model.Chr16.1011 Chr16 31171195 31180371 PREDICTED: Protein unc-119 homolog B nan K23539
gene-evm.TU.Chr16.1012 rna-evm.model.Chr16.1012 Chr16 31187570 31211797 PREDICTED: Aspartate beta-hydroxylase domain-containing protein 2 GO:0018193 K00476
gene-evm.TU.Chr16.1013 rna-evm.model.Chr16.1013.1 Chr16 31214304 31282665 PREDICTED: Dynein heavy chain 10, axonemal GO:0003777;GO:0005524;GO:0007018;GO:0030286 K10408
gene-evm.TU.Chr16.1014 rna-evm.model.Chr16.1014 Chr16 31283620 31285221 uncharacterized protein nan nan
gene-evm.TU.Chr16.1015 rna-evm.model.Chr16.1015 Chr16 31288915 31323837 uncharacterized protein nan nan
gene-evm.TU.Chr16.1016 rna-evm.model.Chr16.1016 Chr16 31324958 31327694 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr16.1017 rna-evm.model.Chr16.1017 Chr16 31327812 31328846 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K11810

For more detailed data, you can explore the Download section to access the full dataset.