CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.999 rna-evm.model.Chr15.999 Chr15 28689658 28692139 PREDICTED: ubiquitin carboxyl-terminal hydrolase 34 [EC:3.4.19.12] GO:0016020 K24190
gene-evm.TU.Chr16.10 rna-evm.model.Chr16.10 Chr16 409175 409987 PREDICTED: WD repeat-containing protein 22 nan K07494
gene-evm.TU.Chr16.100 rna-evm.model.Chr16.100 Chr16 3031518 3032806 PREDICTED: receptor-type tyrosine-protein phosphatase kappa [EC:3.1.3.48] nan K18033
gene-evm.TU.Chr16.1000 rna-evm.model.Chr16.1000 Chr16 30824035 30836707 PREDICTED: Serine/threonine-protein kinase Chk2 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K06641
gene-evm.TU.Chr16.1001 rna-evm.model.Chr16.1001 Chr16 30840820 30853782 PREDICTED: Golgin subfamily A member 3 GO:0007283;GO:0090498 K12478
gene-evm.TU.Chr16.1002 rna-evm.model.Chr16.1002 Chr16 30860827 30874805 PREDICTED: Importin subunit alpha-9 GO:0005515 K15042
gene-evm.TU.Chr16.1003 rna-evm.model.Chr16.1003 Chr16 30881274 30901921 PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A GO:0003676;GO:0006396;GO:0008173 K15332
gene-evm.TU.Chr16.1005 rna-evm.model.Chr16.1005 Chr16 31002300 31010139 uncharacterized protein nan K22977
gene-evm.TU.Chr16.1006 rna-evm.model.Chr16.1006 Chr16 31018658 31019772 PREDICTED: Fucolectin-1 nan nan
gene-evm.TU.Chr16.1007 rna-evm.model.Chr16.1007 Chr16 31029966 31035138 PREDICTED: rRNA methyltransferase 3, mitochondrial GO:0003723;GO:0006396;GO:0008168;GO:0008173 K20095

For more detailed data, you can explore the Download section to access the full dataset.