CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.988 rna-evm.model.Chr15.988 Chr15 28396334 28416484 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 15 GO:0004843;GO:0016579;GO:0004843 K11835
gene-evm.TU.Chr15.989 rna-evm.model.Chr15.989 Chr15 28420986 28426753 PREDICTED: 60S ribosomal protein L18a GO:0003735;GO:0005840;GO:0006412 K02882
gene-evm.TU.Chr15.990 rna-evm.model.Chr15.990 Chr15 28432974 28452557 PREDICTED: Acyl-CoA dehydrogenase family member 9, mitochondrial GO:0016627;GO:0050660;GO:0055114 K15980
gene-evm.TU.Chr15.991 rna-evm.model.Chr15.991 Chr15 28478437 28489003 PREDICTED: YY1-associated factor 2 GO:0045893 K11468
gene-evm.TU.Chr15.992 rna-evm.model.Chr15.992 Chr15 28529830 28532041 PREDICTED: Cholesterol 7-alpha-monooxygenase GO:0004497;GO:0005506;GO:0016705;GO:0020037;GO:0055114 K00489
gene-evm.TU.Chr15.993 rna-evm.model.Chr15.993 Chr15 28607522 28609365 uncharacterized protein nan K22491
gene-evm.TU.Chr15.995 rna-evm.model.Chr15.995 Chr15 28626761 28640728 PREDICTED: Diablo homolog, mitochondrial GO:0005739;GO:0006915;GO:0006919 K10522
gene-evm.TU.Chr15.996 rna-evm.model.Chr15.996 Chr15 28644587 28662287 PREDICTED: Protein mono-ADP-ribosyltransferase PARP3 GO:0003950;GO:0006302;GO:0006471 K10798
gene-evm.TU.Chr15.997 rna-evm.model.Chr15.997 Chr15 28663805 28686510 PREDICTED: MAP kinase-activated protein kinase 2 (Fragment) GO:0004672;GO:0005524;GO:0006468 K04443
gene-evm.TU.Chr15.998 rna-evm.model.Chr15.998 Chr15 28687497 28687730 uncharacterized protein nan K07499

For more detailed data, you can explore the Download section to access the full dataset.