CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.974 rna-evm.model.Chr15.974 Chr15 28079293 28099085 PREDICTED: H(+)/Cl(-) exchange transporter 7 GO:0005247;GO:0006821;GO:0016020;GO:0055085 K05016
gene-evm.TU.Chr15.975 rna-evm.model.Chr15.975 Chr15 28106449 28125688 PREDICTED: tRNA methyltransferase 10 homolog C GO:0005739;GO:0008033 K17654
gene-evm.TU.Chr15.976 rna-evm.model.Chr15.976 Chr15 28139340 28167224 PREDICTED: Ubiquitin carboxyl-terminal hydrolase BAP1 GO:0004843;GO:0006511 K08588
gene-evm.TU.Chr15.977 rna-evm.model.Chr15.977 Chr15 28173126 28177163 PREDICTED: Translation machinery-associated protein 7 nan nan
gene-evm.TU.Chr15.978 rna-evm.model.Chr15.978 Chr15 28185675 28186061 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061
gene-evm.TU.Chr15.979 rna-evm.model.Chr15.979 Chr15 28198439 28213225 PREDICTED: LPXTG cell wall anchor domain-containing protein GO:0003677 K09283
gene-evm.TU.Chr15.980 rna-evm.model.Chr15.980 Chr15 28220286 28221277 PREDICTED: Ubiquitin thioesterase OTU1 GO:0004843;GO:0016579;GO:0030433;GO:0101005 K13719
gene-evm.TU.Chr15.981 rna-evm.model.Chr15.981 Chr15 28227583 28241579 PREDICTED: Srp40p nan K25436
gene-evm.TU.Chr15.986 rna-evm.model.Chr15.986 Chr15 28315683 28317130 uncharacterized protein nan nan
gene-evm.TU.Chr15.987 rna-evm.model.Chr15.987 Chr15 28342899 28386108 PREDICTED: Whirlin GO:0005515 K21879

For more detailed data, you can explore the Download section to access the full dataset.