CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.965 rna-evm.model.Chr15.965 Chr15 27828112 27864886 PREDICTED: Sugar phosphate exchanger 3 GO:0016020;GO:0055085 K03447
gene-evm.TU.Chr15.966 rna-evm.model.Chr15.966 Chr15 27886150 27896569 PREDICTED: CUB and sushi domain-containing protein GO:0005576;GO:0006030;GO:0008061 K23489
gene-evm.TU.Chr15.967 rna-evm.model.Chr15.967 Chr15 27897906 27900940 PREDICTED: CUB and sushi domain-containing protein GO:0005576;GO:0006030;GO:0008061 K23489
gene-evm.TU.Chr15.968 rna-evm.model.Chr15.968 Chr15 27908276 27934350 PREDICTED: Nuclear receptor subfamily 2 group C member 2 GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08544
gene-evm.TU.Chr15.969 rna-evm.model.Chr15.969 Chr15 27957429 27979192 PREDICTED: EGF domain-specific O-linked N-acetylglucosamine transferase GO:0016757 K18134
gene-evm.TU.Chr15.97 rna-evm.model.Chr15.97 Chr15 2019480 2027830 PREDICTED: tRNA methyltransferase 10 homolog C GO:0005739;GO:0008033 K17654
gene-evm.TU.Chr15.970 rna-evm.model.Chr15.970 Chr15 27984744 27994303 PREDICTED: Tubulin alpha-3 chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr15.971 rna-evm.model.Chr15.971 Chr15 28008957 28022378 PREDICTED: LHFPL tetraspan subfamily member 3 protein nan K23893
gene-evm.TU.Chr15.972 rna-evm.model.Chr15.972 Chr15 28030793 28051808 PREDICTED: ELKS/Rab6-interacting/CAST family member 1 nan K16072
gene-evm.TU.Chr15.973 rna-evm.model.Chr15.973 Chr15 28054099 28069397 PREDICTED: Ras-like GTP-binding protein RHO GO:0003924;GO:0005525;GO:0007264 K04513

For more detailed data, you can explore the Download section to access the full dataset.