CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.949 rna-evm.model.Chr15.949 Chr15 27213597 27235269 PREDICTED: DNA repair protein RAD52 homolog GO:0006281;GO:0006310 K10873
gene-evm.TU.Chr15.950 rna-evm.model.Chr15.950.1 Chr15 27242037 27273340 PREDICTED: Fibulin-2 GO:0005509;GO:0005515;GO:0005576;GO:0030198;GO:0062023 K17307
gene-evm.TU.Chr15.951 rna-evm.model.Chr15.951 Chr15 27291269 27296705 PREDICTED: RNA-binding protein spenito GO:0003676 K13190
gene-evm.TU.Chr15.952 rna-evm.model.Chr15.952 Chr15 27297249 27318595 PREDICTED: LHFPL tetraspan subfamily member 3 protein nan K23893
gene-evm.TU.Chr15.953 rna-evm.model.Chr15.953 Chr15 27325206 27336906 PREDICTED: Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial GO:0016874;GO:0016884 K02434
gene-evm.TU.Chr15.957_evm.TU.Chr15.954 rna-evm.model.Chr15.957_evm.model.Chr15.954 Chr15 27353325 27458847 PREDICTED: Early endosome antigen 1 GO:0046872 K12478
gene-evm.TU.Chr15.958 rna-evm.model.Chr15.958 Chr15 27509870 27510538 PREDICTED: dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] nan K10804
gene-evm.TU.Chr15.959 rna-evm.model.Chr15.959 Chr15 27645272 27645631 PREDICTED: PX domain-containing protein kinase-like protein nan nan
gene-evm.TU.Chr15.963 rna-evm.model.Chr15.963 Chr15 27792706 27799543 PREDICTED: Mu-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr15.964 rna-evm.model.Chr15.964 Chr15 27807930 27813405 PREDICTED: Translocon-associated protein subunit delta GO:0005783;GO:0016020 K04571

For more detailed data, you can explore the Download section to access the full dataset.