CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.937 rna-evm.model.Chr15.937 Chr15 26981051 26983001 PREDICTED: interferon induced transmembrane protein GO:0016020 K06566
gene-evm.TU.Chr15.938 rna-evm.model.Chr15.938 Chr15 27002063 27013932 uncharacterized protein nan K06449
gene-evm.TU.Chr15.939 rna-evm.model.Chr15.939 Chr15 27027515 27036973 PREDICTED: Universal stress protein Sll1388 nan K06149
gene-evm.TU.Chr15.942 rna-evm.model.Chr15.942 Chr15 27074268 27088572 PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 nan K10398
gene-evm.TU.Chr15.943 rna-evm.model.Chr15.943 Chr15 27103945 27109955 PREDICTED: Uncharacterized protein C3orf84 nan K06273
gene-evm.TU.Chr15.944 rna-evm.model.Chr15.944 Chr15 27127362 27144486 uncharacterized protein nan nan
gene-evm.TU.Chr15.945 rna-evm.model.Chr15.945 Chr15 27154011 27155747 uncharacterized protein nan K14965
gene-evm.TU.Chr15.946 rna-evm.model.Chr15.946 Chr15 27156096 27166105 PREDICTED: Protein O-glucosyltransferase 1 nan K13667
gene-evm.TU.Chr15.947 rna-evm.model.Chr15.947 Chr15 27173637 27198645 PREDICTED: Serine/threonine-protein kinase Nek4 GO:0004672;GO:0005524;GO:0006468 K08857
gene-evm.TU.Chr15.948 rna-evm.model.Chr15.948 Chr15 27199365 27209968 PREDICTED: Serine/threonine-protein kinase Nek1 GO:0004672;GO:0005524;GO:0006468 K08857

For more detailed data, you can explore the Download section to access the full dataset.