CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.927 rna-evm.model.Chr15.927 Chr15 26828163 26829899 PREDICTED: C1q-related factor nan K24236
gene-evm.TU.Chr15.928 rna-evm.model.Chr15.928 Chr15 26830275 26837698 PREDICTED: Gag-Pol polyprotein GO:0003676;GO:0008270 K12597
gene-evm.TU.Chr15.929 rna-evm.model.Chr15.929 Chr15 26837728 26840989 PREDICTED: Probable RNA-directed DNA polymerase from transposon BS nan K01142
gene-evm.TU.Chr15.930 rna-evm.model.Chr15.930 Chr15 26842847 26846760 PREDICTED: THAP domain-containing protein 4 GO:0003676 K23204
gene-evm.TU.Chr15.931 rna-evm.model.Chr15.931 Chr15 26847880 26850997 PREDICTED: inner nuclear membrane protein Man1 GO:0008270 K21233
gene-evm.TU.Chr15.932 rna-evm.model.Chr15.932 Chr15 26859860 26861926 uncharacterized protein nan K24236
gene-evm.TU.Chr15.933 rna-evm.model.Chr15.933 Chr15 26867491 26892897 PREDICTED: HMG box-containing protein 1 GO:0003676;GO:0003723;GO:0005515;GO:0006355 K21644
gene-evm.TU.Chr15.934 rna-evm.model.Chr15.934 Chr15 26907451 26912616 PREDICTED: delta nan K06051
gene-evm.TU.Chr15.935 rna-evm.model.Chr15.935 Chr15 26941592 26945322 uncharacterized protein nan nan
gene-evm.TU.Chr15.936 rna-evm.model.Chr15.936 Chr15 26956919 26968377 PREDICTED: Fibropellin-1 GO:0005509 K20994

For more detailed data, you can explore the Download section to access the full dataset.