CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.917 rna-evm.model.Chr15.917.2 Chr15 26429443 26537216 PREDICTED: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2 GO:0005515 K05631
gene-evm.TU.Chr15.918 rna-evm.model.Chr15.918 Chr15 26547733 26632649 PREDICTED: Protection of telomeres protein 1 GO:0000723;GO:0000781;GO:0003677;GO:0043047 K11109
gene-evm.TU.Chr15.919 rna-evm.model.Chr15.919 Chr15 26637768 26653889 uncharacterized protein nan nan
gene-evm.TU.Chr15.92 rna-evm.model.Chr15.92 Chr15 1986201 2002545 PREDICTED: 39S ribosomal protein L9, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02939
gene-evm.TU.Chr15.920 rna-evm.model.Chr15.920 Chr15 26657404 26659597 PREDICTED: TELO2-interacting protein 1 nan K20403
gene-evm.TU.Chr15.921 rna-evm.model.Chr15.921 Chr15 26667161 26672590 PREDICTED: Transmembrane protein 168 nan K05340
gene-evm.TU.Chr15.923 rna-evm.model.Chr15.923 Chr15 26690809 26693000 PREDICTED: Caprin-2 nan K24236
gene-evm.TU.Chr15.924 rna-evm.model.Chr15.924 Chr15 26695554 26717664 PREDICTED: Histone-lysine N-methyltransferase EZH2 GO:0005515 K11430
gene-evm.TU.Chr15.925 rna-evm.model.Chr15.925 Chr15 26717745 26736033 PREDICTED: Origin recognition complex subunit 5 GO:0000808;GO:0005634;GO:0006260 K02607
gene-evm.TU.Chr15.926 rna-evm.model.Chr15.926 Chr15 26742895 26808638 PREDICTED: Reelin GO:0001764;GO:0007417;GO:0070325 K06249

For more detailed data, you can explore the Download section to access the full dataset.