CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.903 rna-evm.model.Chr15.903 Chr15 26210842 26216215 PREDICTED: Acid phosphatase type 7 GO:0003993;GO:0016787;GO:0046872 K22390
gene-evm.TU.Chr15.904 rna-evm.model.Chr15.904.1 Chr15 26228350 26253396 PREDICTED: Mitogen-activated protein kinase 14 GO:0004672;GO:0004707;GO:0005524;GO:0006468 K04441
gene-evm.TU.Chr15.905 rna-evm.model.Chr15.905 Chr15 26261864 26262915 PREDICTED: ADP-ribosylation factor-like protein 6 GO:0005525 K07951
gene-evm.TU.Chr15.906 rna-evm.model.Chr15.906 Chr15 26272831 26279661 PREDICTED: Cyclin-dependent kinase 9 GO:0004672;GO:0005524;GO:0006468 K02211
gene-evm.TU.Chr15.909 rna-evm.model.Chr15.909 Chr15 26298397 26312542 PREDICTED: Metabotropic glutamate receptor 3 GO:0004930;GO:0007186;GO:0016020 K04606
gene-evm.TU.Chr15.91 rna-evm.model.Chr15.91 Chr15 1977816 1985789 PREDICTED: Phosphoserine phosphatase nan K01079
gene-evm.TU.Chr15.910 rna-evm.model.Chr15.910 Chr15 26317364 26336002 PREDICTED: TraB domain-containing protein nan K05946
gene-evm.TU.Chr15.911 rna-evm.model.Chr15.911 Chr15 26336026 26354380 PREDICTED: Malignant fibrous histiocytoma-amplified sequence 1 GO:0005515 K10130
gene-evm.TU.Chr15.912 rna-evm.model.Chr15.912 Chr15 26357159 26370438 PREDICTED: Complex I assembly factor TIMMDC1, mitochondrial nan K23505
gene-evm.TU.Chr15.913 rna-evm.model.Chr15.913 Chr15 26388555 26399258 PREDICTED: Zinc finger protein 362 GO:0003676 K23480

For more detailed data, you can explore the Download section to access the full dataset.