CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2367 rna-evm.model.Chr1.2367 Chr1 74505213 74511597 PREDICTED: Cathepsin O GO:0006508;GO:0008234 K01374
gene-evm.TU.Chr1.2368 rna-evm.model.Chr1.2368 Chr1 74520630 74528424 PREDICTED: 40S ribosomal protein S3 GO:0003723;GO:0003735;GO:0006412 K02985
gene-evm.TU.Chr1.2369 rna-evm.model.Chr1.2369 Chr1 74541423 74551497 uncharacterized protein nan nan
gene-evm.TU.Chr1.237_evm.TU.Chr1.236 rna-evm.model.Chr1.237_evm.model.Chr1.236 Chr1 6979058 7105295 PREDICTED: Receptor-type tyrosine-protein phosphatase T GO:0004725;GO:0006470;GO:0016311;GO:0016791 K13297
gene-evm.TU.Chr1.2370 rna-evm.model.Chr1.2370 Chr1 74552286 74554463 uncharacterized protein nan K16817
gene-evm.TU.Chr1.2371 rna-evm.model.Chr1.2371 Chr1 74574027 74574341 uncharacterized protein nan K21208
gene-evm.TU.Chr1.2374 rna-evm.model.Chr1.2374 Chr1 74604504 74605030 uncharacterized protein nan K06912
gene-evm.TU.Chr1.2376 rna-evm.model.Chr1.2376 Chr1 74613618 74615144 uncharacterized protein GO:0016491;GO:0055114 K06912
gene-evm.TU.Chr1.2377 rna-evm.model.Chr1.2377 Chr1 74621017 74672083 PREDICTED: Rho guanine nucleotide exchange factor 17 GO:0005085;GO:0035023 K20689
gene-evm.TU.Chr1.2378 rna-evm.model.Chr1.2378 Chr1 74680094 74708447 PREDICTED: Amino acid transporter AVT3C nan K14209

For more detailed data, you can explore the Download section to access the full dataset.